Cyberinfrastructure for PathoSystems Biology
نویسنده
چکیده
The application of new information and biotechnologies to infectious disease research provides an opportunity to design, develop and deploy a comprehensive cyberinfrastructure for life sciences. The application of integrative approaches including theory, wet experimentation, modeling and simulation and the leveraging of a strong comparative, evolutionary framework has spawned pathosystems biology. I will show examples of how cyberinfrastructure is being developed and used to support pathosystems biology. IV BSB 3 Favor ver os Anais do Simpósio em Springer Verlag, Lecture Notes in Bioinformatics (LNBI número 3594) para este trabalho. Please see the Symposium Proceedings in Lecture Notes in Bioinformatics (LNBI nr. 3594), Springer Verlag, for this paper.
منابع مشابه
A Generalized Framework for Pathosystems Informatics & Bioinformatics Web Services
This paper describes a generalized web-based framework for VBI pathosystems informatics & bioinformatics web services. The framework provides a universal mechanism for accessing web services through web browsers. A web service can be configured to the framework easily. The framework is designed using object-oriented methodology and implemented using Java 2 Enterprise Edition, relational databas...
متن کاملThe iPlant Collaborative: Cyberinfrastructure for Plant Biology
The iPlant Collaborative (iPlant) is a United States National Science Foundation (NSF) funded project that aims to create an innovative, comprehensive, and foundational cyberinfrastructure in support of plant biology research (PSCIC, 2006). iPlant is developing cyberinfrastructure that uniquely enables scientists throughout the diverse fields that comprise plant biology to address Grand Challen...
متن کاملImproving Usability and Accessibility of Cheminformatics Tools for Chemists through Cyberinfrastructure and Education
Some of the latest trends in cheminformatics, computation, and the world wide web are reviewed with predictions of how these are likely to impact the field of cheminformatics in the next five years. The vision and some of the work of the Chemical Informatics and Cyberinfrastructure Collaboratory at Indiana University are described, which we base around the core concepts of e-Science and cyberin...
متن کاملPathosystems Biology: Computational Prediction and Analysis of Host-Pathogen Protein Interaction Networks
متن کامل
Network propagation in the cytoscape cyberinfrastructure
Network propagation is an important and widely used algorithm in systems biology, with applications in protein function prediction, disease gene prioritization, and patient stratification. However, up to this point it has required significant expertise to run. Here we extend the popular network analysis program Cytoscape to perform network propagation as an integrated function. Such integration...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
عنوان ژورنال:
دوره شماره
صفحات -
تاریخ انتشار 2005